Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Ddx28Q9CWT6 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm5279-201ENSMUST00000199575 745 ntBASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm7730-201ENSMUST00000212486 454 ntBASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Ddx28Q9CWT6 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Syt7-205ENSMUST00000224135 1557 ntBASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Gm17330-201ENSMUST00000221047 165 ntBASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Gm24447-201ENSMUST00000083977 338 ntBASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Ddx28Q9CWT6 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Ddx28Q9CWT6 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.15□□□□□ -0.47
Ddx28Q9CWT6 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Ddx28Q9CWT6 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms