Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 KRT8P44-201ENST00000441609 1350 ntBASIC20.91■□□□□ 0.94
HOXC9P31274 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.91■□□□□ 0.94
HOXC9P31274 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
HOXC9P31274 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC9P31274 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.91■□□□□ 0.94
HOXC9P31274 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.91■□□□□ 0.94
HOXC9P31274 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC9P31274 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC9P31274 AC092364.2-201ENST00000596710 2692 ntBASIC20.91■□□□□ 0.94
HOXC9P31274 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
HOXC9P31274 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 YBX1P6-201ENST00000442962 1002 ntBASIC20.9■□□□□ 0.94
HOXC9P31274 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 AC079316.1-201ENST00000548397 411 ntBASIC20.9■□□□□ 0.94
HOXC9P31274 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 DUX4L45-201ENST00000566406 1057 ntBASIC20.9■□□□□ 0.94
HOXC9P31274 AC025279.2-201ENST00000569730 653 ntBASIC20.9■□□□□ 0.94
HOXC9P31274 AC008687.7-202ENST00000637404 953 ntBASIC20.9■□□□□ 0.94
HOXC9P31274 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
HOXC9P31274 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC9P31274 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC9P31274 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC9P31274 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.89■□□□□ 0.94
HOXC9P31274 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC9P31274 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC9P31274 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.89■□□□□ 0.94
HOXC9P31274 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 AC020907.1-201ENST00000616460 1350 ntBASIC20.89■□□□□ 0.93
HOXC9P31274 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
HOXC9P31274 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXC9P31274 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC9P31274 OLR1-203ENST00000432556 950 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC9P31274 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.89■□□□□ 0.93
HOXC9P31274 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.89■□□□□ 0.93
HOXC9P31274 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXC9P31274 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.89■□□□□ 0.93
HOXC9P31274 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HOXC9P31274 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 AC018695.7-201ENST00000624587 2492 ntBASIC20.89■□□□□ 0.93
HOXC9P31274 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms