Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm19221-201ENSMUST00000221827 1477 ntBASIC12.67□□□□□ -0.38
Chd3B1AR17 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
Chd3B1AR17 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Chd3B1AR17 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.66□□□□□ -0.38
Chd3B1AR17 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC12.66□□□□□ -0.38
Chd3B1AR17 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm26083-201ENSMUST00000157904 193 ntBASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm7584-201ENSMUST00000175829 940 ntBASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.66□□□□□ -0.38
Chd3B1AR17 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.66□□□□□ -0.38
Chd3B1AR17 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.66□□□□□ -0.38
Chd3B1AR17 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Chd3B1AR17 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC12.65□□□□□ -0.38
Chd3B1AR17 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.65□□□□□ -0.38
Chd3B1AR17 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Chd3B1AR17 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm9004-201ENSMUST00000218739 1222 ntBASIC12.65□□□□□ -0.38
Chd3B1AR17 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.65□□□□□ -0.38
Chd3B1AR17 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.65□□□□□ -0.38
Chd3B1AR17 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Chd3B1AR17 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Chd3B1AR17 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.65□□□□□ -0.39
Chd3B1AR17 AC167669.2-201ENSMUST00000224417 1620 ntBASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm15236-201ENSMUST00000117309 379 ntBASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm12176-201ENSMUST00000121420 875 ntBASIC12.65□□□□□ -0.39
Chd3B1AR17 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm38266-201ENSMUST00000194931 421 ntBASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC12.65□□□□□ -0.39
Chd3B1AR17 Gm22058-201ENSMUST00000083393 310 ntBASIC12.65□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms