Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm44855-201ENSMUST00000205725 362 ntBASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Trim39Q9ESN2 Gm43463-201ENSMUST00000195967 1803 ntBASIC12.21□□□□□ -0.46
Trim39Q9ESN2 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Gm22189-201ENSMUST00000103822 86 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Mir6977-201ENSMUST00000184960 64 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Gm5279-201ENSMUST00000199575 745 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Gm7730-201ENSMUST00000212486 454 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Trim39Q9ESN2 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.19□□□□□ -0.46
Trim39Q9ESN2 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms