Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC14.73□□□□□ -0.05
Ddx55Q6ZPL9 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm12266-201ENSMUST00000120311 962 ntBASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm37835-201ENSMUST00000193305 361 ntBASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Gm10676-201ENSMUST00000098778 3221 ntBASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.72□□□□□ -0.05
Ddx55Q6ZPL9 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 AC122197.2-201ENSMUST00000219196 1635 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm6335-201ENSMUST00000118081 1194 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm7816-201ENSMUST00000119884 1194 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm15542-201ENSMUST00000121585 1194 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 AU022133-201ENSMUST00000200601 873 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm17812-201ENSMUST00000204935 318 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Aprt-ps-201ENSMUST00000212311 505 ntBASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ddx55Q6ZPL9 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ddx55Q6ZPL9 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ddx55Q6ZPL9 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms