Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC11.56□□□□□ -0.56
Col5a1O88207 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col5a1O88207 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC11.56□□□□□ -0.56
Col5a1O88207 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Col5a1O88207 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC11.56□□□□□ -0.56
Col5a1O88207 Mir6546-201ENSMUST00000184460 62 ntBASIC11.56□□□□□ -0.56
Col5a1O88207 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col5a1O88207 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC11.56□□□□□ -0.56
Col5a1O88207 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC11.56□□□□□ -0.56
Col5a1O88207 Gm45925-201ENSMUST00000218882 744 ntBASIC11.56□□□□□ -0.56
Col5a1O88207 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC11.56□□□□□ -0.56
Col5a1O88207 AC174797.2-202ENSMUST00000225729 568 ntBASIC11.56□□□□□ -0.56
Col5a1O88207 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col5a1O88207 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col5a1O88207 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Gm44401-201ENSMUST00000204462 2375 ntBASIC11.55□□□□□ -0.56
Col5a1O88207 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
Col5a1O88207 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col5a1O88207 Gm13296-201ENSMUST00000117854 997 ntBASIC11.55□□□□□ -0.56
Col5a1O88207 Gm13394-201ENSMUST00000121658 1000 ntBASIC11.55□□□□□ -0.56
Col5a1O88207 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.55□□□□□ -0.56
Col5a1O88207 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC11.55□□□□□ -0.56
Col5a1O88207 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.55□□□□□ -0.56
Col5a1O88207 Rprl1-202ENSMUST00000198476 238 ntBASIC11.55□□□□□ -0.56
Col5a1O88207 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.55□□□□□ -0.56
Col5a1O88207 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col5a1O88207 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Col5a1O88207 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Gm45495-201ENSMUST00000200940 1700 ntBASIC11.55□□□□□ -0.56
Col5a1O88207 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Col5a1O88207 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Gm6580-201ENSMUST00000117504 1357 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Col5a1O88207 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC11.54□□□□□ -0.56
Col5a1O88207 Gm15432-201ENSMUST00000121106 195 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 Gm44651-201ENSMUST00000207343 372 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Gzmn-202ENSMUST00000225535 989 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.54□□□□□ -0.56
Col5a1O88207 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Col5a1O88207 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Col5a1O88207 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Col5a1O88207 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Col5a1O88207 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Col5a1O88207 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Col5a1O88207 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms