Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RNF4P78317 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
RNF4P78317 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 BNIP3P1-202ENST00000550043 1585 ntBASIC14.87□□□□□ -0.03
RNF4P78317 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 BCRP1-201ENST00000444246 691 ntBASIC14.87□□□□□ -0.03
RNF4P78317 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.87□□□□□ -0.03
RNF4P78317 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 AJ011932.1-201ENST00000621707 465 ntBASIC14.87□□□□□ -0.03
RNF4P78317 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RNF4P78317 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.87□□□□□ -0.03
RNF4P78317 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RNF4P78317 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
RNF4P78317 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.87□□□□□ -0.03
RNF4P78317 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.87□□□□□ -0.03
RNF4P78317 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 KRT8P37-201ENST00000451609 1420 ntBASIC14.86□□□□□ -0.03
RNF4P78317 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 AC134407.2-201ENST00000625089 1978 ntBASIC14.86□□□□□ -0.03
RNF4P78317 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.86□□□□□ -0.03
RNF4P78317 FO393414.2-201ENST00000405153 598 ntBASIC14.86□□□□□ -0.03
RNF4P78317 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.86□□□□□ -0.03
RNF4P78317 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 MIR6069-201ENST00000620069 79 ntBASIC14.86□□□□□ -0.03
RNF4P78317 AL033527.5-202ENST00000641632 1098 ntBASIC14.86□□□□□ -0.03
RNF4P78317 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.86□□□□□ -0.03
RNF4P78317 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.86□□□□□ -0.03
RNF4P78317 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 FLJ16779-201ENST00000612722 7638 ntBASIC14.86□□□□□ -0.03
RNF4P78317 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.86□□□□□ -0.03
RNF4P78317 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
RNF4P78317 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RNF4P78317 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RNF4P78317 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.85□□□□□ -0.03
RNF4P78317 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms