Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AP001282.1-201ENST00000531301 1499 ntBASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 TMEM14DP-201ENST00000422205 345 ntBASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 HILS1-202ENST00000545329 423 ntBASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AL008721.1-201ENST00000609964 604 ntBASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 PHKG1P2-201ENST00000457537 863 ntBASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 RRP7BP-205ENST00000566851 833 ntBASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PAAF1Q9BRP4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 ARSEP1-201ENST00000420443 635 ntBASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 RN7SL399P-201ENST00000471648 279 ntBASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 AC011495.1-201ENST00000498085 584 ntBASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 HNRNPUP1-201ENST00000554987 333 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms