Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm5940-201ENSMUST00000117582 1068 ntBASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm7399-201ENSMUST00000032395 858 ntBASIC14.7□□□□□ -0.06
Ushbp1Q8R370 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm10012-201ENSMUST00000078252 192 ntBASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ushbp1Q8R370 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm15371-201ENSMUST00000117057 784 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm5187-201ENSMUST00000117317 991 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm6447-201ENSMUST00000118905 835 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm5370-201ENSMUST00000187187 574 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm19931-201ENSMUST00000198920 368 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ushbp1Q8R370 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Gm23931-201ENSMUST00000103842 109 ntBASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Gm6983-201ENSMUST00000214912 628 ntBASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ushbp1Q8R370 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms