Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 AC105917.1-201ENST00000506637 2539 ntBASIC16.13■□□□□ 0.17
LDB2O43679 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 RBPMS2P1-201ENST00000437762 623 ntBASIC16.13■□□□□ 0.17
LDB2O43679 SPDYE14P-201ENST00000442619 822 ntBASIC16.13■□□□□ 0.17
LDB2O43679 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 AC023141.5-201ENST00000458585 616 ntBASIC16.13■□□□□ 0.17
LDB2O43679 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 AC243562.2-201ENST00000561247 970 ntBASIC16.13■□□□□ 0.17
LDB2O43679 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
LDB2O43679 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.13■□□□□ 0.17
LDB2O43679 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LDB2O43679 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
LDB2O43679 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 PRAL-201ENST00000624952 3286 ntBASIC16.12■□□□□ 0.17
LDB2O43679 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 AC004987.2-201ENST00000395959 1148 ntBASIC16.12■□□□□ 0.17
LDB2O43679 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CNN2P11-201ENST00000429351 262 ntBASIC16.12■□□□□ 0.17
LDB2O43679 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.12■□□□□ 0.17
LDB2O43679 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 AC026150.2-201ENST00000564693 1156 ntBASIC16.12■□□□□ 0.17
LDB2O43679 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.12■□□□□ 0.17
LDB2O43679 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.12■□□□□ 0.17
LDB2O43679 AC027612.4-201ENST00000605371 583 ntBASIC16.12■□□□□ 0.17
LDB2O43679 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.12■□□□□ 0.17
LDB2O43679 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LDB2O43679 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LDB2O43679 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.12■□□□□ 0.17
LDB2O43679 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LDB2O43679 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB2O43679 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB2O43679 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.11■□□□□ 0.17
LDB2O43679 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
LDB2O43679 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LDB2O43679 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms