Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Trim3Q9R1R2 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm15678-201ENSMUST00000117573 960 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm15376-201ENSMUST00000122258 783 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm26464-201ENSMUST00000157094 305 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trim3Q9R1R2 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm15770-201ENSMUST00000117498 584 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm11918-201ENSMUST00000121660 179 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm27701-201ENSMUST00000184498 110 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Trim3Q9R1R2 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms