Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Gm18284-201ENSMUST00000172604 624 ntBASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Col13a1Q9R1N9 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col13a1Q9R1N9 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col13a1Q9R1N9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Col13a1Q9R1N9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.47
Col13a1Q9R1N9 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.01■□□□□ 0.47
Col13a1Q9R1N9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col13a1Q9R1N9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col13a1Q9R1N9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18■□□□□ 0.47
Col13a1Q9R1N9 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col13a1Q9R1N9 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col13a1Q9R1N9 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col13a1Q9R1N9 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col13a1Q9R1N9 Gm7199-201ENSMUST00000118327 1485 ntBASIC17.99■□□□□ 0.47
Col13a1Q9R1N9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Col13a1Q9R1N9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col13a1Q9R1N9 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.98■□□□□ 0.47
Col13a1Q9R1N9 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC17.98■□□□□ 0.47
Col13a1Q9R1N9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Col13a1Q9R1N9 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col13a1Q9R1N9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Golgb1-201ENSMUST00000023534 498 ntBASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.97■□□□□ 0.47
Col13a1Q9R1N9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col13a1Q9R1N9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col13a1Q9R1N9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col13a1Q9R1N9 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col13a1Q9R1N9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Col13a1Q9R1N9 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
Col13a1Q9R1N9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 213.8 ms