Protein–RNA interactions for Protein: Q9CWM4

Pfdn1, Prefoldin subunit 1, mousemouse

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn1Q9CWM4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Pfdn1Q9CWM4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Pfdn1Q9CWM4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Pfdn1Q9CWM4 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Pfdn1Q9CWM4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Pfdn1Q9CWM4 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pfdn1Q9CWM4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pfdn1Q9CWM4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pfdn1Q9CWM4 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.69■□□□□ 0.58
Pfdn1Q9CWM4 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Pfdn1Q9CWM4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Pfdn1Q9CWM4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Pfdn1Q9CWM4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Pfdn1Q9CWM4 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Pfdn1Q9CWM4 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.67■□□□□ 0.58
Pfdn1Q9CWM4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pfdn1Q9CWM4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pfdn1Q9CWM4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Pfdn1Q9CWM4 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Pfdn1Q9CWM4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Pfdn1Q9CWM4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Pfdn1Q9CWM4 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Pfdn1Q9CWM4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Pfdn1Q9CWM4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Golph3-202ENSMUST00000226517 2359 ntBASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Pfdn1Q9CWM4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Pfdn1Q9CWM4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pfdn1Q9CWM4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pfdn1Q9CWM4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pfdn1Q9CWM4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pfdn1Q9CWM4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Pfdn1Q9CWM4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pfdn1Q9CWM4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pfdn1Q9CWM4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pfdn1Q9CWM4 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pfdn1Q9CWM4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.6■□□□□ 0.57
Pfdn1Q9CWM4 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pfdn1Q9CWM4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 61.6 ms