Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim56Q80VI1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim56Q80VI1 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim56Q80VI1 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Gm8093-201ENSMUST00000128935 1892 ntBASIC25.37■■□□□ 1.65
Trim56Q80VI1 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Trim56Q80VI1 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Gm11847-201ENSMUST00000125165 1119 ntBASIC25.36■■□□□ 1.65
Trim56Q80VI1 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trim56Q80VI1 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trim56Q80VI1 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC25.35■■□□□ 1.65
Trim56Q80VI1 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC25.35■■□□□ 1.65
Trim56Q80VI1 Gm10232-201ENSMUST00000089221 720 ntBASIC25.35■■□□□ 1.65
Trim56Q80VI1 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trim56Q80VI1 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC25.34■■□□□ 1.65
Trim56Q80VI1 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trim56Q80VI1 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trim56Q80VI1 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trim56Q80VI1 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim56Q80VI1 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim56Q80VI1 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim56Q80VI1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
Trim56Q80VI1 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.64
Trim56Q80VI1 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim56Q80VI1 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim56Q80VI1 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim56Q80VI1 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim56Q80VI1 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim56Q80VI1 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim56Q80VI1 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
Trim56Q80VI1 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim56Q80VI1 AC158990.1-201ENSMUST00000221450 2016 ntBASIC25.3■■□□□ 1.64
Trim56Q80VI1 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Gm18755-201ENSMUST00000218030 1099 ntBASIC25.3■■□□□ 1.64
Trim56Q80VI1 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC25.3■■□□□ 1.64
Trim56Q80VI1 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC25.29■■□□□ 1.64
Trim56Q80VI1 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim56Q80VI1 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
Trim56Q80VI1 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Trim56Q80VI1 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim56Q80VI1 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
Trim56Q80VI1 AC093043.1-201ENSMUST00000226700 898 ntBASIC25.28■■□□□ 1.64
Trim56Q80VI1 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
Trim56Q80VI1 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Trim56Q80VI1 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Trim56Q80VI1 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Trim56Q80VI1 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC25.26■■□□□ 1.63
Trim56Q80VI1 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Trim56Q80VI1 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.26■■□□□ 1.63
Trim56Q80VI1 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Trim56Q80VI1 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Trim56Q80VI1 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trim56Q80VI1 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Trim56Q80VI1 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trim56Q80VI1 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Trim56Q80VI1 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
Trim56Q80VI1 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
Trim56Q80VI1 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Trim56Q80VI1 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Trim56Q80VI1 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC25.24■■□□□ 1.63
Trim56Q80VI1 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Trim56Q80VI1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Trim56Q80VI1 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Trim56Q80VI1 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Trim56Q80VI1 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Trim56Q80VI1 Gm42501-201ENSMUST00000200220 1026 ntBASIC25.23■■□□□ 1.63
Trim56Q80VI1 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Trim56Q80VI1 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Trim56Q80VI1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Trim56Q80VI1 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Trim56Q80VI1 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC25.22■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms