Protein–RNA interactions for Protein: O88704

Hcn1, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1, mousemouse

Predictions only

Length 910 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn1O88704 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Hcn1O88704 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hcn1O88704 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hcn1O88704 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hcn1O88704 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hcn1O88704 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hcn1O88704 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.25■□□□□ 0.83
Hcn1O88704 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Hcn1O88704 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hcn1O88704 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hcn1O88704 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Hcn1O88704 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.23■□□□□ 0.83
Hcn1O88704 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hcn1O88704 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hcn1O88704 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hcn1O88704 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hcn1O88704 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hcn1O88704 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.22■□□□□ 0.83
Hcn1O88704 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.22■□□□□ 0.83
Hcn1O88704 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hcn1O88704 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hcn1O88704 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hcn1O88704 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.21■□□□□ 0.83
Hcn1O88704 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hcn1O88704 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hcn1O88704 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hcn1O88704 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hcn1O88704 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Hcn1O88704 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Hcn1O88704 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.2■□□□□ 0.82
Hcn1O88704 Gm5921-201ENSMUST00000075898 882 ntBASIC20.2■□□□□ 0.82
Hcn1O88704 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Hcn1O88704 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hcn1O88704 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Hcn1O88704 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.19■□□□□ 0.82
Hcn1O88704 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hcn1O88704 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.18■□□□□ 0.82
Hcn1O88704 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hcn1O88704 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Hcn1O88704 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hcn1O88704 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.17■□□□□ 0.82
Hcn1O88704 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hcn1O88704 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hcn1O88704 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hcn1O88704 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hcn1O88704 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hcn1O88704 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hcn1O88704 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Hcn1O88704 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hcn1O88704 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hcn1O88704 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hcn1O88704 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.15■□□□□ 0.82
Hcn1O88704 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.14■□□□□ 0.81
Hcn1O88704 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.14■□□□□ 0.81
Hcn1O88704 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hcn1O88704 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
Hcn1O88704 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.13■□□□□ 0.81
Hcn1O88704 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.13■□□□□ 0.81
Hcn1O88704 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hcn1O88704 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms