Protein–RNA interactions for Protein: O88704

Hcn1, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1, mousemouse

Predictions only

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn1O88704 Gm25239-201ENSMUST00000174915 86 ntBASIC34.85■■■■□ 3.17
Hcn1O88704 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
Hcn1O88704 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Hcn1O88704 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Hcn1O88704 Gm15042-201ENSMUST00000120212 883 ntBASIC30.68■■■□□ 2.5
Hcn1O88704 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
Hcn1O88704 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Hcn1O88704 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Hcn1O88704 Gm24109-201ENSMUST00000175489 103 ntBASIC30.11■■■□□ 2.41
Hcn1O88704 Gm15045-201ENSMUST00000117359 883 ntBASIC30.04■■■□□ 2.4
Hcn1O88704 Psd-208ENSMUST00000224556 2034 ntBASIC29.97■■■□□ 2.39
Hcn1O88704 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Hcn1O88704 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Hcn1O88704 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
Hcn1O88704 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Hcn1O88704 Gm23366-201ENSMUST00000175022 89 ntBASIC29.15■■■□□ 2.26
Hcn1O88704 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Hcn1O88704 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Hcn1O88704 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.82■■■□□ 2.2
Hcn1O88704 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
Hcn1O88704 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hcn1O88704 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Hcn1O88704 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Hcn1O88704 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Hcn1O88704 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Hcn1O88704 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Hcn1O88704 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Hcn1O88704 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Hcn1O88704 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Hcn1O88704 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
Hcn1O88704 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.26■■■□□ 2.12
Hcn1O88704 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Hcn1O88704 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Hcn1O88704 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.16■■■□□ 2.1
Hcn1O88704 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.13■■■□□ 2.09
Hcn1O88704 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Hcn1O88704 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Hcn1O88704 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Hcn1O88704 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Hcn1O88704 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.86■■■□□ 2.05
Hcn1O88704 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.73■■■□□ 2.03
Hcn1O88704 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.65■■■□□ 2.02
Hcn1O88704 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Hcn1O88704 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
Hcn1O88704 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Hcn1O88704 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Hcn1O88704 Gm25238-201ENSMUST00000174914 89 ntBASIC27.44■■□□□ 1.98
Hcn1O88704 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Hcn1O88704 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC27.4■■□□□ 1.98
Hcn1O88704 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hcn1O88704 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hcn1O88704 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Hcn1O88704 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.23■■□□□ 1.95
Hcn1O88704 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
Hcn1O88704 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.15■■□□□ 1.94
Hcn1O88704 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Hcn1O88704 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Hcn1O88704 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.11■■□□□ 1.93
Hcn1O88704 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.11■■□□□ 1.93
Hcn1O88704 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Hcn1O88704 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Hcn1O88704 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Hcn1O88704 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.97■■□□□ 1.91
Hcn1O88704 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Hcn1O88704 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
Hcn1O88704 Gm27325-201ENSMUST00000175467 74 ntBASIC26.92■■□□□ 1.9
Hcn1O88704 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.92■■□□□ 1.9
Hcn1O88704 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Hcn1O88704 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Hcn1O88704 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.69■■□□□ 1.86
Hcn1O88704 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.68■■□□□ 1.86
Hcn1O88704 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Hcn1O88704 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Hcn1O88704 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Hcn1O88704 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC26.64■■□□□ 1.86
Hcn1O88704 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Hcn1O88704 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC26.57■■□□□ 1.84
Hcn1O88704 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.56■■□□□ 1.84
Hcn1O88704 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Hcn1O88704 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Hcn1O88704 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Hcn1O88704 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Hcn1O88704 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
Hcn1O88704 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Hcn1O88704 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Hcn1O88704 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC26.44■■□□□ 1.82
Hcn1O88704 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Hcn1O88704 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Hcn1O88704 Rab21-202ENSMUST00000218831 843 ntBASIC26.3■■□□□ 1.8
Hcn1O88704 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.28■■□□□ 1.8
Hcn1O88704 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Hcn1O88704 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Hcn1O88704 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Hcn1O88704 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.22■■□□□ 1.79
Hcn1O88704 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Hcn1O88704 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.18■■□□□ 1.78
Hcn1O88704 Gm25262-201ENSMUST00000174934 133 ntBASIC26.17■■□□□ 1.78
Hcn1O88704 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Hcn1O88704 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
Hcn1O88704 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms