Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.86■□□□□ 0.93
Cbx4O55187 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Cbx4O55187 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.86■□□□□ 0.93
Cbx4O55187 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cbx4O55187 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cbx4O55187 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cbx4O55187 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cbx4O55187 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Cbx4O55187 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cbx4O55187 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cbx4O55187 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Cbx4O55187 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cbx4O55187 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cbx4O55187 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Cbx4O55187 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cbx4O55187 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Cbx4O55187 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cbx4O55187 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cbx4O55187 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
Cbx4O55187 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
Cbx4O55187 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.84■□□□□ 0.93
Cbx4O55187 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Cbx4O55187 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cbx4O55187 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cbx4O55187 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cbx4O55187 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Cbx4O55187 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Cbx4O55187 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Cbx4O55187 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.82■□□□□ 0.92
Cbx4O55187 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cbx4O55187 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Cbx4O55187 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cbx4O55187 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cbx4O55187 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cbx4O55187 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cbx4O55187 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.82■□□□□ 0.92
Cbx4O55187 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cbx4O55187 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Cbx4O55187 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cbx4O55187 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cbx4O55187 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.81■□□□□ 0.92
Cbx4O55187 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cbx4O55187 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cbx4O55187 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cbx4O55187 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Cbx4O55187 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cbx4O55187 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.8■□□□□ 0.92
Cbx4O55187 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.8■□□□□ 0.92
Cbx4O55187 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.8■□□□□ 0.92
Cbx4O55187 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.8■□□□□ 0.92
Cbx4O55187 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cbx4O55187 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cbx4O55187 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.79■□□□□ 0.92
Cbx4O55187 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Cbx4O55187 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Cbx4O55187 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cbx4O55187 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cbx4O55187 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cbx4O55187 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cbx4O55187 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cbx4O55187 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Cbx4O55187 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Cbx4O55187 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cbx4O55187 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cbx4O55187 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cbx4O55187 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Cbx4O55187 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.76■□□□□ 0.91
Cbx4O55187 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.76■□□□□ 0.91
Cbx4O55187 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cbx4O55187 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Cbx4O55187 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.75■□□□□ 0.91
Cbx4O55187 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cbx4O55187 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.74■□□□□ 0.91
Cbx4O55187 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Cbx4O55187 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cbx4O55187 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cbx4O55187 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cbx4O55187 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cbx4O55187 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cbx4O55187 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cbx4O55187 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cbx4O55187 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cbx4O55187 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.73■□□□□ 0.91
Cbx4O55187 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.73■□□□□ 0.91
Cbx4O55187 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cbx4O55187 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.73■□□□□ 0.91
Cbx4O55187 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms