Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Gm45855-201ENSMUST00000212546 880 ntBASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trav16d-dv11A0A075B617 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trav16d-dv11A0A075B617 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trav16d-dv11A0A075B617 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trav16d-dv11A0A075B617 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Gm42418-201ENSMUST00000182010 1831 ntBASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC15.57■□□□□ 0.08
Trav16d-dv11A0A075B617 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav16d-dv11A0A075B617 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav16d-dv11A0A075B617 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav16d-dv11A0A075B617 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav16d-dv11A0A075B617 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav16d-dv11A0A075B617 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav16d-dv11A0A075B617 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Nkain2-201ENSMUST00000092602 558 ntBASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav16d-dv11A0A075B617 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav16d-dv11A0A075B617 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trav16d-dv11A0A075B617 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav16d-dv11A0A075B617 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav16d-dv11A0A075B617 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav16d-dv11A0A075B617 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Trav16d-dv11A0A075B617 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav16d-dv11A0A075B617 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav16d-dv11A0A075B617 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav16d-dv11A0A075B617 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Trav16d-dv11A0A075B617 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC15.5■□□□□ 0.07
Trav16d-dv11A0A075B617 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC15.49■□□□□ 0.07
Trav16d-dv11A0A075B617 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 9.7 ms