Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Gm11222-201ENSMUST00000119005 738 ntBASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Gm15703-201ENSMUST00000120250 880 ntBASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Gm8018-201ENSMUST00000173536 789 ntBASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Gm45638-201ENSMUST00000211507 2878 ntBASIC18.02■□□□□ 0.48
Cpsf1Q9EPU4 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Cpsf1Q9EPU4 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Cpsf1Q9EPU4 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Cpsf1Q9EPU4 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Cpsf1Q9EPU4 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cpsf1Q9EPU4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm25214-201ENSMUST00000104573 129 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm7118-201ENSMUST00000200167 1003 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm18056-201ENSMUST00000207670 568 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm18061-201ENSMUST00000208350 562 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm18063-201ENSMUST00000208529 568 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm18052-201ENSMUST00000208750 559 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Gm10608-202ENSMUST00000213924 676 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 AC122371.3-201ENSMUST00000223402 1061 ntBASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Cpsf1Q9EPU4 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm15808-201ENSMUST00000119046 604 ntBASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm12502-201ENSMUST00000120197 444 ntBASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Gm4366-201ENSMUST00000201488 1342 ntBASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cpsf1Q9EPU4 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cpsf1Q9EPU4 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cpsf1Q9EPU4 Gm13875-201ENSMUST00000120162 282 ntBASIC17.98■□□□□ 0.47
Cpsf1Q9EPU4 Gm22058-201ENSMUST00000083393 310 ntBASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms