Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Use1Q9CQ56 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.52□□□□□ -0.4
Use1Q9CQ56 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.4
Use1Q9CQ56 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.52□□□□□ -0.4
Use1Q9CQ56 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Use1Q9CQ56 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm7775-201ENSMUST00000218871 853 ntBASIC12.52□□□□□ -0.41
Use1Q9CQ56 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm9063-201ENSMUST00000223299 582 ntBASIC12.52□□□□□ -0.41
Use1Q9CQ56 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.52□□□□□ -0.41
Use1Q9CQ56 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Use1Q9CQ56 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.51□□□□□ -0.41
Use1Q9CQ56 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Gm13616-201ENSMUST00000120600 222 ntBASIC12.51□□□□□ -0.41
Use1Q9CQ56 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Mir7221-201ENSMUST00000184009 72 ntBASIC12.51□□□□□ -0.41
Use1Q9CQ56 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.51□□□□□ -0.41
Use1Q9CQ56 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms