Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 C1QBPP1-201ENST00000400117 770 ntBASIC20.2■□□□□ 0.82
RFC4P35249 MIR1247-201ENST00000408206 136 ntBASIC20.2■□□□□ 0.82
RFC4P35249 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.2■□□□□ 0.82
RFC4P35249 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC20.2■□□□□ 0.82
RFC4P35249 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
RFC4P35249 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.2■□□□□ 0.82
RFC4P35249 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.2■□□□□ 0.82
RFC4P35249 DERL2-202ENST00000570848 657 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.2■□□□□ 0.82
RFC4P35249 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.2■□□□□ 0.82
RFC4P35249 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.2■□□□□ 0.82
RFC4P35249 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFC4P35249 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.19■□□□□ 0.82
RFC4P35249 LETM1P2-201ENST00000597330 2178 ntBASIC20.19■□□□□ 0.82
RFC4P35249 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 AC060834.1-201ENST00000443027 2032 ntBASIC20.19■□□□□ 0.82
RFC4P35249 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RFC4P35249 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 MPV17-206ENST00000402722 827 ntTSL 3 BASIC20.19■□□□□ 0.82
RFC4P35249 GPAA1P2-201ENST00000417923 928 ntBASIC20.19■□□□□ 0.82
RFC4P35249 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.19■□□□□ 0.82
RFC4P35249 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.19■□□□□ 0.82
RFC4P35249 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.19■□□□□ 0.82
RFC4P35249 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFC4P35249 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 AC134312.5-201ENST00000568031 1313 ntBASIC20.19■□□□□ 0.82
RFC4P35249 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFC4P35249 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.19■□□□□ 0.82
RFC4P35249 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 TOMM22P5-201ENST00000416399 439 ntBASIC20.18■□□□□ 0.82
RFC4P35249 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.18■□□□□ 0.82
RFC4P35249 RPL13AP20-201ENST00000459725 609 ntBASIC20.18■□□□□ 0.82
RFC4P35249 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC20.18■□□□□ 0.82
RFC4P35249 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 AC120045.2-201ENST00000567334 178 ntBASIC20.18■□□□□ 0.82
RFC4P35249 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.18■□□□□ 0.82
RFC4P35249 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC20.18■□□□□ 0.82
RFC4P35249 CLUHP6-201ENST00000580789 941 ntBASIC20.18■□□□□ 0.82
RFC4P35249 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 AL049840.4-201ENST00000602422 811 ntBASIC20.18■□□□□ 0.82
RFC4P35249 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.18■□□□□ 0.82
RFC4P35249 AC009542.2-202ENST00000619004 1067 ntBASIC20.18■□□□□ 0.82
RFC4P35249 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 GGT3P-204ENST00000453783 1664 ntBASIC20.18■□□□□ 0.82
RFC4P35249 AC141586.5-201ENST00000624546 2050 ntBASIC20.18■□□□□ 0.82
RFC4P35249 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RFC4P35249 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC20.18■□□□□ 0.82
RFC4P35249 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RFC4P35249 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFC4P35249 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFC4P35249 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
RFC4P35249 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.17■□□□□ 0.82
RFC4P35249 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RFC4P35249 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.17■□□□□ 0.82
RFC4P35249 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.17■□□□□ 0.82
RFC4P35249 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RFC4P35249 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.17■□□□□ 0.82
RFC4P35249 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.17■□□□□ 0.82
RFC4P35249 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms