Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 Rprl1-202ENSMUST00000198476 238 ntBASIC15.34■□□□□ 0.05
Col1a1P11087 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 AC154222.2-201ENSMUST00000225848 607 ntBASIC15.34■□□□□ 0.05
Col1a1P11087 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Col1a1P11087 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Col1a1P11087 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC15.33■□□□□ 0.05
Col1a1P11087 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC15.33■□□□□ 0.05
Col1a1P11087 Gm13296-201ENSMUST00000117854 997 ntBASIC15.33■□□□□ 0.05
Col1a1P11087 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC15.33■□□□□ 0.05
Col1a1P11087 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Mir7032-201ENSMUST00000185154 79 ntBASIC15.33■□□□□ 0.05
Col1a1P11087 Ighv5-7-201ENSMUST00000192302 244 ntBASIC15.33■□□□□ 0.05
Col1a1P11087 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Col1a1P11087 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col1a1P11087 Gm37133-201ENSMUST00000192705 1922 ntBASIC15.33■□□□□ 0.05
Col1a1P11087 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Col1a1P11087 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Col1a1P11087 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC15.33■□□□□ 0.04
Col1a1P11087 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col1a1P11087 Gm37835-201ENSMUST00000193305 361 ntBASIC15.33■□□□□ 0.04
Col1a1P11087 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC15.33■□□□□ 0.04
Col1a1P11087 Gm18393-201ENSMUST00000208349 1131 ntBASIC15.33■□□□□ 0.04
Col1a1P11087 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC15.33■□□□□ 0.04
Col1a1P11087 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC15.33■□□□□ 0.04
Col1a1P11087 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col1a1P11087 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col1a1P11087 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col1a1P11087 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col1a1P11087 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.32■□□□□ 0.04
Col1a1P11087 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 n-R5s14-201ENSMUST00000122688 107 ntBASIC15.32■□□□□ 0.04
Col1a1P11087 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col1a1P11087 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col1a1P11087 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms