Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim56Q80VI1 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Gm8805-201ENSMUST00000117848 313 ntBASIC15.67■□□□□ 0.1
Trim56Q80VI1 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim56Q80VI1 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Gm13226-201ENSMUST00000117838 404 ntBASIC15.66■□□□□ 0.1
Trim56Q80VI1 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC15.66■□□□□ 0.1
Trim56Q80VI1 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC15.66■□□□□ 0.1
Trim56Q80VI1 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Gm16372-201ENSMUST00000073088 450 ntBASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Gm14608-201ENSMUST00000120030 1553 ntBASIC15.66■□□□□ 0.1
Trim56Q80VI1 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim56Q80VI1 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gm4271-201ENSMUST00000174444 973 ntBASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gm9299-201ENSMUST00000206392 1140 ntBASIC15.65■□□□□ 0.1
Trim56Q80VI1 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gm44891-201ENSMUST00000208817 2223 ntBASIC15.65■□□□□ 0.1
Trim56Q80VI1 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Trim56Q80VI1 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms