Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HDAC4P56524 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.09■□□□□ 0.33
HDAC4P56524 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.09■□□□□ 0.33
HDAC4P56524 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC4P56524 AC243562.1-201ENST00000560672 389 ntBASIC17.09■□□□□ 0.33
HDAC4P56524 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.09■□□□□ 0.33
HDAC4P56524 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.09■□□□□ 0.33
HDAC4P56524 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.09■□□□□ 0.33
HDAC4P56524 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.09■□□□□ 0.33
HDAC4P56524 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HDAC4P56524 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.09■□□□□ 0.33
HDAC4P56524 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HDAC4P56524 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HDAC4P56524 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDAC4P56524 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HDAC4P56524 U82695.1-201ENST00000635752 1889 ntBASIC17.08■□□□□ 0.33
HDAC4P56524 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HDAC4P56524 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.08■□□□□ 0.32
HDAC4P56524 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 BX842568.4-201ENST00000421222 227 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 ACTG1P14-201ENST00000446382 1122 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 DNAJB3-201ENST00000446806 729 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.08■□□□□ 0.32
HDAC4P56524 KRT8P48-201ENST00000515599 1220 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 FAM86C2P-203ENST00000528684 1004 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.08■□□□□ 0.32
HDAC4P56524 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.08■□□□□ 0.32
HDAC4P56524 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
HDAC4P56524 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HDAC4P56524 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDAC4P56524 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.08■□□□□ 0.32
HDAC4P56524 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HDAC4P56524 ELL2P1-201ENST00000413990 1906 ntBASIC17.08■□□□□ 0.32
HDAC4P56524 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDAC4P56524 GPX1P2-201ENST00000429271 606 ntBASIC17.07■□□□□ 0.32
HDAC4P56524 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.07■□□□□ 0.32
HDAC4P56524 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.07■□□□□ 0.32
HDAC4P56524 YBX1P5-201ENST00000509441 847 ntBASIC17.07■□□□□ 0.32
HDAC4P56524 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 AC005829.1-201ENST00000570002 483 ntBASIC17.07■□□□□ 0.32
HDAC4P56524 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.07■□□□□ 0.32
HDAC4P56524 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms