Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HMGA1P17096 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.83■□□□□ 0.29
HMGA1P17096 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.83■□□□□ 0.28
HMGA1P17096 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGA1P17096 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGA1P17096 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.83■□□□□ 0.28
HMGA1P17096 EEF1DP4-201ENST00000446006 880 ntBASIC16.83■□□□□ 0.28
HMGA1P17096 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 AC093004.1-201ENST00000508850 424 ntBASIC16.83■□□□□ 0.28
HMGA1P17096 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HMGA1P17096 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGA1P17096 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGA1P17096 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGA1P17096 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HMGA1P17096 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 AD000864.1-201ENST00000624076 2295 ntBASIC16.82■□□□□ 0.28
HMGA1P17096 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGA1P17096 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGA1P17096 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 AC026471.1-201ENST00000564629 3026 ntBASIC16.82■□□□□ 0.28
HMGA1P17096 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 SLC7A15P-201ENST00000424028 1363 ntBASIC16.82■□□□□ 0.28
HMGA1P17096 AL391825.1-201ENST00000457671 1364 ntBASIC16.82■□□□□ 0.28
HMGA1P17096 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HMGA1P17096 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
HMGA1P17096 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGA1P17096 AC092337.1-201ENST00000568699 1129 ntBASIC16.82■□□□□ 0.28
HMGA1P17096 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
HMGA1P17096 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGA1P17096 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGA1P17096 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGA1P17096 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGA1P17096 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms