Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Vps53Q8CCB4 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Vps53Q8CCB4 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Vps53Q8CCB4 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm42690-201ENSMUST00000197921 1836 ntBASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm9816-201ENSMUST00000122292 1414 ntBASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm9200-201ENSMUST00000118513 1354 ntBASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gm12390-201ENSMUST00000117897 397 ntBASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Vps53Q8CCB4 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms