Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 ME2P1-201ENST00000426028 1970 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 POU5F1P6-201ENST00000466990 990 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 AC026150.2-201ENST00000564693 1156 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 AC093028.1-201ENST00000622998 982 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN3O15551 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.9■□□□□ 0.46
CLDN3O15551 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN3O15551 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN3O15551 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN3O15551 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 AL589702.1-201ENST00000641229 1509 ntBASIC17.89■□□□□ 0.45
CLDN3O15551 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 DOC2GP-204ENST00000639052 2548 ntBASIC17.89■□□□□ 0.45
CLDN3O15551 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN3O15551 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 SPDYE14P-201ENST00000442619 822 ntBASIC17.89■□□□□ 0.45
CLDN3O15551 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN3O15551 AL512356.2-201ENST00000546955 174 ntBASIC17.89■□□□□ 0.45
CLDN3O15551 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.89■□□□□ 0.45
CLDN3O15551 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN3O15551 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN3O15551 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN3O15551 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN3O15551 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN3O15551 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 U82695.1-201ENST00000635752 1889 ntBASIC17.88■□□□□ 0.45
CLDN3O15551 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 AP3S2-216ENST00000617003 1561 ntBASIC17.88■□□□□ 0.45
CLDN3O15551 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.88■□□□□ 0.45
CLDN3O15551 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms