Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm10710-201ENSMUST00000047876 3971 ntBASIC20.27■□□□□ 0.83
Cux1P53564 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Cux1P53564 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Gm12626-201ENSMUST00000117339 1983 ntBASIC20.26■□□□□ 0.83
Cux1P53564 Gm12623-201ENSMUST00000119849 1983 ntBASIC20.26■□□□□ 0.83
Cux1P53564 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Gm11930-201ENSMUST00000117788 190 ntBASIC20.26■□□□□ 0.83
Cux1P53564 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Cux1P53564 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Gm7789-202ENSMUST00000211273 1400 ntBASIC20.26■□□□□ 0.83
Cux1P53564 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC20.26■□□□□ 0.83
Cux1P53564 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cux1P53564 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC20.25■□□□□ 0.83
Cux1P53564 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC20.25■□□□□ 0.83
Cux1P53564 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC20.25■□□□□ 0.83
Cux1P53564 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Gm8856-201ENSMUST00000185254 1144 ntBASIC20.25■□□□□ 0.83
Cux1P53564 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC20.25■□□□□ 0.83
Cux1P53564 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Sybu-209ENSMUST00000228639 4113 ntBASIC20.25■□□□□ 0.83
Cux1P53564 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cux1P53564 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC20.24■□□□□ 0.83
Cux1P53564 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Cux1P53564 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC20.24■□□□□ 0.83
Cux1P53564 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Gm3096-201ENSMUST00000185770 364 ntBASIC20.24■□□□□ 0.83
Cux1P53564 AC113031.8-201ENSMUST00000227856 631 ntBASIC20.24■□□□□ 0.83
Cux1P53564 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC20.24■□□□□ 0.83
Cux1P53564 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Cux1P53564 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cux1P53564 Gm4864-201ENSMUST00000219894 1461 ntBASIC20.24■□□□□ 0.83
Cux1P53564 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Gm14277-201ENSMUST00000121195 360 ntBASIC20.23■□□□□ 0.83
Cux1P53564 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Cux1P53564 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Gm16296-201ENSMUST00000159905 325 ntBASIC20.23■□□□□ 0.83
Cux1P53564 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC20.23■□□□□ 0.83
Cux1P53564 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC20.23■□□□□ 0.83
Cux1P53564 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC20.23■□□□□ 0.83
Cux1P53564 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC20.23■□□□□ 0.83
Cux1P53564 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Cux1P53564 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Cux1P53564 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Cux1P53564 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Cux1P53564 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC20.23■□□□□ 0.83
Cux1P53564 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cux1P53564 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cux1P53564 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms