Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ShhQ62226 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ShhQ62226 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ShhQ62226 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
ShhQ62226 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ShhQ62226 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
ShhQ62226 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
ShhQ62226 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ShhQ62226 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ShhQ62226 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ShhQ62226 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ShhQ62226 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ShhQ62226 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.85■□□□□ 0.77
ShhQ62226 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ShhQ62226 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ShhQ62226 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC19.85■□□□□ 0.77
ShhQ62226 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ShhQ62226 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ShhQ62226 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ShhQ62226 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
ShhQ62226 Gm13241-201ENSMUST00000094493 780 ntBASIC19.84■□□□□ 0.77
ShhQ62226 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ShhQ62226 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
ShhQ62226 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ShhQ62226 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ShhQ62226 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ShhQ62226 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
ShhQ62226 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ShhQ62226 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
ShhQ62226 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ShhQ62226 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ShhQ62226 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.82■□□□□ 0.76
ShhQ62226 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ShhQ62226 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC19.82■□□□□ 0.76
ShhQ62226 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.82■□□□□ 0.76
ShhQ62226 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.82■□□□□ 0.76
ShhQ62226 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ShhQ62226 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC19.81■□□□□ 0.76
ShhQ62226 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
ShhQ62226 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.81■□□□□ 0.76
ShhQ62226 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ShhQ62226 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.8■□□□□ 0.76
ShhQ62226 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ShhQ62226 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
ShhQ62226 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ShhQ62226 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ShhQ62226 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
ShhQ62226 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ShhQ62226 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ShhQ62226 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC19.79■□□□□ 0.76
ShhQ62226 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ShhQ62226 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ShhQ62226 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
ShhQ62226 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ShhQ62226 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ShhQ62226 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ShhQ62226 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ShhQ62226 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ShhQ62226 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ShhQ62226 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ShhQ62226 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ShhQ62226 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ShhQ62226 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.77■□□□□ 0.76
ShhQ62226 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ShhQ62226 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ShhQ62226 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ShhQ62226 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ShhQ62226 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ShhQ62226 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ShhQ62226 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.76■□□□□ 0.75
ShhQ62226 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ShhQ62226 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ShhQ62226 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ShhQ62226 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms