Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nr1h4Q60641 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.38■□□□□ 0.85
Nr1h4Q60641 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.38■□□□□ 0.85
Nr1h4Q60641 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1h4Q60641 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.37■□□□□ 0.85
Nr1h4Q60641 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1h4Q60641 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nr1h4Q60641 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1h4Q60641 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1h4Q60641 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1h4Q60641 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.36■□□□□ 0.85
Nr1h4Q60641 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.36■□□□□ 0.85
Nr1h4Q60641 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1h4Q60641 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nr1h4Q60641 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Nr1h4Q60641 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.35■□□□□ 0.85
Nr1h4Q60641 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nr1h4Q60641 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nr1h4Q60641 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Nr1h4Q60641 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1h4Q60641 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Nr1h4Q60641 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1h4Q60641 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nr1h4Q60641 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nr1h4Q60641 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.33■□□□□ 0.84
Nr1h4Q60641 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nr1h4Q60641 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nr1h4Q60641 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Nr1h4Q60641 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1h4Q60641 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1h4Q60641 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1h4Q60641 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nr1h4Q60641 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1h4Q60641 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nr1h4Q60641 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.31■□□□□ 0.84
Nr1h4Q60641 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.31■□□□□ 0.84
Nr1h4Q60641 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nr1h4Q60641 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.3■□□□□ 0.84
Nr1h4Q60641 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nr1h4Q60641 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.28■□□□□ 0.84
Nr1h4Q60641 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Nr1h4Q60641 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nr1h4Q60641 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.28■□□□□ 0.84
Nr1h4Q60641 Gm44428-201ENSMUST00000204474 874 ntBASIC20.28■□□□□ 0.84
Nr1h4Q60641 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.28■□□□□ 0.84
Nr1h4Q60641 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1h4Q60641 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1h4Q60641 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1h4Q60641 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nr1h4Q60641 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Nr1h4Q60641 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.26■□□□□ 0.83
Nr1h4Q60641 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nr1h4Q60641 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h4Q60641 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms