Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Nr1i3O35627 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Nr1i3O35627 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Nr1i3O35627 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Nr1i3O35627 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC23.13■■□□□ 1.29
Nr1i3O35627 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Nr1i3O35627 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
Nr1i3O35627 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Nr1i3O35627 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Nr1i3O35627 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
Nr1i3O35627 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Nr1i3O35627 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC23.11■■□□□ 1.29
Nr1i3O35627 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Nr1i3O35627 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Nr1i3O35627 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC23.11■■□□□ 1.29
Nr1i3O35627 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Nr1i3O35627 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Nr1i3O35627 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Nr1i3O35627 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Nr1i3O35627 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC23.09■■□□□ 1.29
Nr1i3O35627 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23.09■■□□□ 1.29
Nr1i3O35627 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Nr1i3O35627 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Nr1i3O35627 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Nr1i3O35627 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Nr1i3O35627 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
Nr1i3O35627 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Nr1i3O35627 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Nr1i3O35627 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Nr1i3O35627 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Nr1i3O35627 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Nr1i3O35627 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Nr1i3O35627 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Nr1i3O35627 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Nr1i3O35627 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Nr1i3O35627 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Nr1i3O35627 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Nr1i3O35627 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
Nr1i3O35627 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Nr1i3O35627 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Nr1i3O35627 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Nr1i3O35627 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Nr1i3O35627 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Nr1i3O35627 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC23.06■■□□□ 1.28
Nr1i3O35627 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Nr1i3O35627 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Nr1i3O35627 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Nr1i3O35627 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Nr1i3O35627 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Nr1i3O35627 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
Nr1i3O35627 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC23.04■■□□□ 1.28
Nr1i3O35627 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.04■■□□□ 1.28
Nr1i3O35627 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Nr1i3O35627 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Nr1i3O35627 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Nr1i3O35627 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Nr1i3O35627 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Nr1i3O35627 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Nr1i3O35627 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Nr1i3O35627 Nsd1-206ENSMUST00000224918 1001 ntBASIC23.03■■□□□ 1.28
Nr1i3O35627 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.03■■□□□ 1.28
Nr1i3O35627 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Nr1i3O35627 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Nr1i3O35627 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Nr1i3O35627 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Nr1i3O35627 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Nr1i3O35627 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Nr1i3O35627 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Nr1i3O35627 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Nr1i3O35627 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Nr1i3O35627 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Nr1i3O35627 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23■■□□□ 1.27
Nr1i3O35627 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Nr1i3O35627 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.99■■□□□ 1.27
Nr1i3O35627 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Nr1i3O35627 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Nr1i3O35627 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Nr1i3O35627 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Nr1i3O35627 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Nr1i3O35627 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Nr1i3O35627 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Nr1i3O35627 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Nr1i3O35627 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC22.98■■□□□ 1.27
Nr1i3O35627 Gm12504-201ENSMUST00000120860 2231 ntBASIC22.98■■□□□ 1.27
Nr1i3O35627 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Nr1i3O35627 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
Nr1i3O35627 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms