Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC11.15□□□□□ -0.62
Hmgb3O54879 Gm26616-202ENSMUST00000195676 3107 ntBASIC11.15□□□□□ -0.63
Hmgb3O54879 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.63
Hmgb3O54879 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hmgb3O54879 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC11.15□□□□□ -0.63
Hmgb3O54879 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Hmgb3O54879 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Hmgb3O54879 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Gm6756-201ENSMUST00000180647 1620 ntBASIC11.14□□□□□ -0.63
Hmgb3O54879 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Aff1-201ENSMUST00000031256 8312 ntAPPRIS P4 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Mir7036b-201ENSMUST00000184791 63 ntBASIC11.14□□□□□ -0.63
Hmgb3O54879 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Thap2-203ENSMUST00000218989 527 ntBASIC11.14□□□□□ -0.63
Hmgb3O54879 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Ssr1-203ENSMUST00000225246 1825 ntBASIC11.14□□□□□ -0.63
Hmgb3O54879 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.14□□□□□ -0.63
Hmgb3O54879 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Hmgb3O54879 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Hmgb3O54879 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gm43423-201ENSMUST00000198390 2094 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Asb1-201ENSMUST00000027538 5826 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Hmgb3O54879 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Hmgb3O54879 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gm2445-201ENSMUST00000182798 989 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 Ank2-226ENSMUST00000189368 339 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gm10060-201ENSMUST00000212002 111 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC11.13□□□□□ -0.63
Hmgb3O54879 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 CT030704.2-201ENSMUST00000228887 494 ntBASIC11.13□□□□□ -0.63
Hmgb3O54879 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
Hmgb3O54879 Gpr173-201ENSMUST00000070316 4855 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Hmgb3O54879 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 99.4 ms