Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ube3dQ8BX13 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm10766-202ENSMUST00000194123 606 ntBASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ube3dQ8BX13 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ube3dQ8BX13 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm14928-201ENSMUST00000120198 477 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm21470-201ENSMUST00000187680 696 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Rubie-203ENSMUST00000227803 2430 ntBASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ube3dQ8BX13 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms