Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ushbp1Q8R370 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Ntrk2-209ENSMUST00000225950 2640 ntBASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ushbp1Q8R370 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 AC139350.1-201ENSMUST00000227064 1594 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm10327-201ENSMUST00000105222 1002 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm15240-201ENSMUST00000118156 720 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm28911-201ENSMUST00000188837 117 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm5069-202ENSMUST00000192714 1011 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm38319-201ENSMUST00000194537 1266 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Gm13859-201ENSMUST00000119936 1423 ntBASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ushbp1Q8R370 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ushbp1Q8R370 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms