Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 TSSK5P-201ENST00000423978 907 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 RAB43P1-201ENST00000561790 589 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 LINC01225-203ENST00000563550 1244 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AC084121.4-201ENST00000641598 221 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AF228730.8-201ENST00000642140 221 ntBASIC15.94■□□□□ 0.14
COL28A1Q2UY09 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL28A1Q2UY09 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AC007541.1-201ENST00000570282 1469 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 ALG1L8P-201ENST00000533887 760 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 KRT17P8-201ENST00000540749 863 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AC092552.1-201ENST00000547243 906 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AC140912.1-201ENST00000577171 1054 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MIR4453-201ENST00000584019 89 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AC046185.3-201ENST00000623228 1824 ntBASIC15.93■□□□□ 0.14
COL28A1Q2UY09 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL28A1Q2UY09 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 PP12613-201ENST00000424958 2230 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 AC009336.1-201ENST00000608941 1553 ntBASIC15.92■□□□□ 0.14
COL28A1Q2UY09 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL28A1Q2UY09 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms