Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.7□□□□□ -0.54
Nkx3-1P97436 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm23931-201ENSMUST00000103842 109 ntBASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm5687-201ENSMUST00000118252 640 ntBASIC11.7□□□□□ -0.54
Nkx3-1P97436 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm27514-201ENSMUST00000183692 110 ntBASIC11.7□□□□□ -0.54
Nkx3-1P97436 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm17330-201ENSMUST00000221047 165 ntBASIC11.7□□□□□ -0.54
Nkx3-1P97436 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Nkx3-1P97436 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm29608-201ENSMUST00000190444 463 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm38144-201ENSMUST00000192790 465 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm43179-201ENSMUST00000198797 275 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm18934-201ENSMUST00000216671 1044 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm17870-201ENSMUST00000219489 1174 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Gm44291-201ENSMUST00000203102 2865 ntBASIC11.69□□□□□ -0.54
Nkx3-1P97436 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC11.69□□□□□ -0.54
Nkx3-1P97436 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm8337-201ENSMUST00000187358 1938 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm18222-201ENSMUST00000202416 1387 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Mmp14-206ENSMUST00000225641 3238 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms