Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Traf1P39428 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Gm12020-201ENSMUST00000119030 2042 ntBASIC15.68■□□□□ 0.1
Traf1P39428 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC15.68■□□□□ 0.1
Traf1P39428 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Traf1P39428 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.67■□□□□ 0.1
Traf1P39428 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Gm12390-201ENSMUST00000117897 397 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Traf1P39428 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC15.67■□□□□ 0.1
Traf1P39428 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Traf1P39428 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC15.67■□□□□ 0.1
Traf1P39428 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC15.67■□□□□ 0.1
Traf1P39428 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.67■□□□□ 0.1
Traf1P39428 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Traf1P39428 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.67■□□□□ 0.1
Traf1P39428 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Traf1P39428 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Traf1P39428 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Traf1P39428 Mir7085-201ENSMUST00000184353 66 ntBASIC15.66■□□□□ 0.1
Traf1P39428 Gm29649-201ENSMUST00000185649 419 ntBASIC15.66■□□□□ 0.1
Traf1P39428 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Traf1P39428 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC15.66■□□□□ 0.1
Traf1P39428 AY702102-202ENSMUST00000194651 1173 ntBASIC15.66■□□□□ 0.1
Traf1P39428 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Traf1P39428 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.66■□□□□ 0.1
Traf1P39428 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Traf1P39428 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.66■□□□□ 0.1
Traf1P39428 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Traf1P39428 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Traf1P39428 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Traf1P39428 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Gm11425-201ENSMUST00000119608 498 ntBASIC15.65■□□□□ 0.1
Traf1P39428 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Traf1P39428 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms