Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ccdc9Q8VC31 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm18262-201ENSMUST00000222560 1946 ntBASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm8097-201ENSMUST00000117903 829 ntBASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm34391-201ENSMUST00000203706 907 ntBASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc9Q8VC31 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm38273-201ENSMUST00000194987 2382 ntBASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm9726-201ENSMUST00000180321 678 ntBASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm27459-201ENSMUST00000184860 107 ntBASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 AC157950.1-201ENSMUST00000217561 2168 ntBASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc9Q8VC31 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Gm15991-202ENSMUST00000212123 3565 ntBASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc9Q8VC31 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms