Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HOXC11O43248 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXC11O43248 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXC11O43248 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXC11O43248 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
HOXC11O43248 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXC11O43248 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
HOXC11O43248 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXC11O43248 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXC11O43248 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.83■□□□□ 0.28
HOXC11O43248 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.83■□□□□ 0.28
HOXC11O43248 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
HOXC11O43248 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXC11O43248 BANF1P1-201ENST00000553684 263 ntBASIC16.83■□□□□ 0.28
HOXC11O43248 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.83■□□□□ 0.28
HOXC11O43248 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.83■□□□□ 0.28
HOXC11O43248 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC11O43248 GPAA1P2-202ENST00000606848 1787 ntBASIC16.83■□□□□ 0.28
HOXC11O43248 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HOXC11O43248 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HOXC11O43248 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
HOXC11O43248 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HOXC11O43248 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXC11O43248 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 HLA-J-202ENST00000469281 1241 ntBASIC16.82■□□□□ 0.28
HOXC11O43248 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
HOXC11O43248 AC105021.1-202ENST00000570572 669 ntBASIC16.82■□□□□ 0.28
HOXC11O43248 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXC11O43248 RN7SL828P-201ENST00000607615 303 ntBASIC16.82■□□□□ 0.28
HOXC11O43248 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 CETN4P-206ENST00000642099 2168 ntBASIC16.82■□□□□ 0.28
HOXC11O43248 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 AL031731.1-201ENST00000642131 2094 ntBASIC16.82■□□□□ 0.28
HOXC11O43248 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HOXC11O43248 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC11O43248 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC11O43248 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 AC022144.1-201ENST00000602255 1580 ntBASIC16.81■□□□□ 0.28
HOXC11O43248 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC11O43248 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC11O43248 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC11O43248 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.81■□□□□ 0.28
HOXC11O43248 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.81■□□□□ 0.28
HOXC11O43248 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC11O43248 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms