Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Mir1247-201ENSMUST00000116706 82 ntBASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gm26927-201ENSMUST00000182385 965 ntBASIC18.61■□□□□ 0.57
Usp40Q8BWR4 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Tyms-ps-201ENSMUST00000219550 915 ntBASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp40Q8BWR4 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm8706-201ENSMUST00000197372 1491 ntBASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm44069-201ENSMUST00000204898 506 ntBASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm17823-201ENSMUST00000217830 1006 ntBASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Gm10676-201ENSMUST00000098778 3221 ntBASIC18.6■□□□□ 0.57
Usp40Q8BWR4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp40Q8BWR4 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Gm5620-201ENSMUST00000077991 1348 ntBASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Gm16372-201ENSMUST00000073088 450 ntBASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Usp40Q8BWR4 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 AC096628.2-201ENSMUST00000225443 1413 ntBASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp40Q8BWR4 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms