Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 AC131997.1-201ENSMUST00000228611 1229 ntBASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Gm7488-201ENSMUST00000117148 684 ntBASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Upf3bQ3ULL6 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Upf3bQ3ULL6 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms