Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.38□□□□□ -0.11
Usp4P35123 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp4P35123 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.38□□□□□ -0.11
Usp4P35123 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp4P35123 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.38□□□□□ -0.11
Usp4P35123 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.38□□□□□ -0.11
Usp4P35123 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Usp4P35123 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Usp4P35123 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp4P35123 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Usp4P35123 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Usp4P35123 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.37□□□□□ -0.11
Usp4P35123 Gm6973-201ENSMUST00000117080 721 ntBASIC14.37□□□□□ -0.11
Usp4P35123 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC14.37□□□□□ -0.11
Usp4P35123 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.37□□□□□ -0.11
Usp4P35123 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC14.37□□□□□ -0.11
Usp4P35123 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.37□□□□□ -0.11
Usp4P35123 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Usp4P35123 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Usp4P35123 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp4P35123 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Usp4P35123 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.36□□□□□ -0.11
Usp4P35123 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.36□□□□□ -0.11
Usp4P35123 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Usp4P35123 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.36□□□□□ -0.11
Usp4P35123 Gm6756-201ENSMUST00000180647 1620 ntBASIC14.36□□□□□ -0.11
Usp4P35123 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Usp4P35123 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.36□□□□□ -0.11
Usp4P35123 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.36□□□□□ -0.11
Usp4P35123 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp4P35123 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Usp4P35123 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Usp4P35123 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.35□□□□□ -0.11
Usp4P35123 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms