Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6d-4Q5R1I0 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trav6d-4Q5R1I0 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Gm22567-201ENSMUST00000175542 342 ntBASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6d-4Q5R1I0 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Gm15820-201ENSMUST00000201566 728 ntBASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Trav6d-4Q5R1I0 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6d-4Q5R1I0 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trav6d-4Q5R1I0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav6d-4Q5R1I0 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
Trav6d-4Q5R1I0 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6d-4Q5R1I0 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6d-4Q5R1I0 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6d-4Q5R1I0 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trav6d-4Q5R1I0 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6d-4Q5R1I0 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6d-4Q5R1I0 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trav6d-4Q5R1I0 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Gm10232-201ENSMUST00000089221 720 ntBASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6d-4Q5R1I0 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6d-4Q5R1I0 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trav6d-4Q5R1I0 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
Trav6d-4Q5R1I0 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6d-4Q5R1I0 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6d-4Q5R1I0 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6d-4Q5R1I0 Gm42501-201ENSMUST00000200220 1026 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms