Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col27a1Q5QNQ9 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.7■■□□□ 1.06
Col27a1Q5QNQ9 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.69■■□□□ 1.06
Col27a1Q5QNQ9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col27a1Q5QNQ9 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Col27a1Q5QNQ9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.67■■□□□ 1.06
Col27a1Q5QNQ9 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.67■■□□□ 1.06
Col27a1Q5QNQ9 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col27a1Q5QNQ9 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col27a1Q5QNQ9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col27a1Q5QNQ9 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col27a1Q5QNQ9 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.66■■□□□ 1.06
Col27a1Q5QNQ9 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.66■■□□□ 1.06
Col27a1Q5QNQ9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col27a1Q5QNQ9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.65■■□□□ 1.06
Col27a1Q5QNQ9 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Col27a1Q5QNQ9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col27a1Q5QNQ9 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col27a1Q5QNQ9 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col27a1Q5QNQ9 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col27a1Q5QNQ9 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.64■■□□□ 1.05
Col27a1Q5QNQ9 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col27a1Q5QNQ9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.63■■□□□ 1.05
Col27a1Q5QNQ9 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.62■■□□□ 1.05
Col27a1Q5QNQ9 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col27a1Q5QNQ9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col27a1Q5QNQ9 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col27a1Q5QNQ9 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.62■■□□□ 1.05
Col27a1Q5QNQ9 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.61■■□□□ 1.05
Col27a1Q5QNQ9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col27a1Q5QNQ9 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col27a1Q5QNQ9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col27a1Q5QNQ9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col27a1Q5QNQ9 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col27a1Q5QNQ9 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC21.58■■□□□ 1.05
Col27a1Q5QNQ9 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col27a1Q5QNQ9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.58■■□□□ 1.04
Col27a1Q5QNQ9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col27a1Q5QNQ9 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col27a1Q5QNQ9 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.55■■□□□ 1.04
Col27a1Q5QNQ9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col27a1Q5QNQ9 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col27a1Q5QNQ9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.55■■□□□ 1.04
Col27a1Q5QNQ9 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col27a1Q5QNQ9 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.54■■□□□ 1.04
Col27a1Q5QNQ9 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col27a1Q5QNQ9 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col27a1Q5QNQ9 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Col27a1Q5QNQ9 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col27a1Q5QNQ9 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Col27a1Q5QNQ9 Gm43017-201ENSMUST00000198296 752 ntBASIC21.53■■□□□ 1.04
Col27a1Q5QNQ9 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms