Protein–RNA interactions for Protein: O88704

Hcn1, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1, mousemouse

Predictions only

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn1O88704 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hcn1O88704 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hcn1O88704 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Hcn1O88704 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hcn1O88704 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Hcn1O88704 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.55■□□□□ 0.88
Hcn1O88704 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.55■□□□□ 0.88
Hcn1O88704 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hcn1O88704 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hcn1O88704 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hcn1O88704 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hcn1O88704 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Hcn1O88704 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Hcn1O88704 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hcn1O88704 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hcn1O88704 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.54■□□□□ 0.88
Hcn1O88704 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Hcn1O88704 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.53■□□□□ 0.88
Hcn1O88704 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hcn1O88704 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hcn1O88704 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hcn1O88704 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hcn1O88704 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Hcn1O88704 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.52■□□□□ 0.88
Hcn1O88704 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.51■□□□□ 0.87
Hcn1O88704 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hcn1O88704 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hcn1O88704 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Hcn1O88704 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hcn1O88704 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Hcn1O88704 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.5■□□□□ 0.87
Hcn1O88704 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Hcn1O88704 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hcn1O88704 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
Hcn1O88704 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.49■□□□□ 0.87
Hcn1O88704 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.49■□□□□ 0.87
Hcn1O88704 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Hcn1O88704 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Hcn1O88704 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hcn1O88704 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hcn1O88704 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.49■□□□□ 0.87
Hcn1O88704 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hcn1O88704 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hcn1O88704 Gm10420-201ENSMUST00000121713 882 ntBASIC20.48■□□□□ 0.87
Hcn1O88704 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hcn1O88704 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hcn1O88704 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hcn1O88704 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.47■□□□□ 0.87
Hcn1O88704 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Hcn1O88704 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.46■□□□□ 0.87
Hcn1O88704 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Hcn1O88704 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Hcn1O88704 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hcn1O88704 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Hcn1O88704 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hcn1O88704 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Hcn1O88704 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hcn1O88704 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hcn1O88704 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hcn1O88704 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.44■□□□□ 0.86
Hcn1O88704 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hcn1O88704 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hcn1O88704 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Hcn1O88704 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hcn1O88704 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Hcn1O88704 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Hcn1O88704 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hcn1O88704 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.42■□□□□ 0.86
Hcn1O88704 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hcn1O88704 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
Hcn1O88704 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.41■□□□□ 0.86
Hcn1O88704 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Hcn1O88704 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Hcn1O88704 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hcn1O88704 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Hcn1O88704 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Hcn1O88704 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hcn1O88704 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hcn1O88704 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.4■□□□□ 0.86
Hcn1O88704 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms