Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhgb8A0A140LI48 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhgb8A0A140LI48 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.34■□□□□ 0.69
Pcdhgb8A0A140LI48 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhgb8A0A140LI48 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhgb8A0A140LI48 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhgb8A0A140LI48 Gm4419-202ENSMUST00000226239 1431 ntBASIC19.34■□□□□ 0.69
Pcdhgb8A0A140LI48 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Pcdhgb8A0A140LI48 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Pcdhgb8A0A140LI48 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Pcdhgb8A0A140LI48 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.33■□□□□ 0.69
Pcdhgb8A0A140LI48 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.33■□□□□ 0.68
Pcdhgb8A0A140LI48 Terc-201ENSMUST00000082862 423 ntBASIC19.33■□□□□ 0.68
Pcdhgb8A0A140LI48 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhgb8A0A140LI48 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhgb8A0A140LI48 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhgb8A0A140LI48 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhgb8A0A140LI48 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhgb8A0A140LI48 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Pcdhgb8A0A140LI48 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Pcdhgb8A0A140LI48 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Pcdhgb8A0A140LI48 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Pcdhgb8A0A140LI48 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Pcdhgb8A0A140LI48 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.27■□□□□ 0.68
Pcdhgb8A0A140LI48 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Pcdhgb8A0A140LI48 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.26■□□□□ 0.67
Pcdhgb8A0A140LI48 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Gm14523-201ENSMUST00000117260 558 ntBASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Pcdhgb8A0A140LI48 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Gm7332-201ENSMUST00000118351 454 ntBASIC19.24■□□□□ 0.67
Pcdhgb8A0A140LI48 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 12 ms