Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Gm17795-201ENSMUST00000214505 757 ntBASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Gm20445-201ENSMUST00000061905 565 ntBASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim9Q8C7M3 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 AC161252.3-201ENSMUST00000225465 1549 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm15321-201ENSMUST00000121290 288 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm24694-201ENSMUST00000180054 110 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm27663-201ENSMUST00000184839 110 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trim9Q8C7M3 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gm37015-201ENSMUST00000192763 1521 ntBASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 AC139054.1-201ENSMUST00000226898 1598 ntBASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gm27772-201ENSMUST00000184900 187 ntBASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gm14371-201ENSMUST00000138925 1518 ntBASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
Trim9Q8C7M3 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Ntrk2-209ENSMUST00000225950 2640 ntBASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim9Q8C7M3 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms