Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm37014-201ENSMUST00000194723 2253 ntBASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm15358-201ENSMUST00000119249 520 ntBASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim55G3X8Y1 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm25927-201ENSMUST00000175058 117 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm34391-201ENSMUST00000203706 907 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 CT573086.2-201ENSMUST00000227277 4992 ntBASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim55G3X8Y1 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Gm8584-201ENSMUST00000171982 758 ntBASIC14.05□□□□□ -0.16
Trim55G3X8Y1 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Birc2-201ENSMUST00000054878 378 ntBASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim55G3X8Y1 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms