Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Ushbp1Q8R370 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gm44719-201ENSMUST00000206404 149 ntBASIC15.41■□□□□ 0.06
Ushbp1Q8R370 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gm18062-201ENSMUST00000208020 547 ntBASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gm18055-201ENSMUST00000208254 547 ntBASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Ushbp1Q8R370 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 AC153872.1-201ENSMUST00000199539 128 ntBASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Ushbp1Q8R370 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms