Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col28a1Q2UY11 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm2445-201ENSMUST00000182798 989 ntBASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm7774-201ENSMUST00000200064 533 ntBASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col28a1Q2UY11 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col28a1Q2UY11 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms